publications

What we've been up to

2024

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    GMOCU: Digital Documentation, Management, and Biological Risk Assessment of Genetic Parts
    Christoph Wagner , Uriel Urquiza‐Garcia , Matias D. Zurbriggen , and Hannes M. Beyer
    Advanced Biology, Jan 2024
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    Benchmarking Active Learning Protocols for Ligand-Binding Affinity Prediction
    Rohan Gorantla , Alžbeta Kubincová , Benjamin Suutari , Benjamin P. Cossins , and Antonia S. J. S. Mey
    Journal of Chemical Information and Modeling, Mar 2024
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2023

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    Investigating the relationship between cue immersion and the strength of motor imagery during hand and wrist movements
    Christopher L. Hunt , Keqin Ding , Christoph S. Wagner , Nicolas Berberich , Karahan Yilmazer , and 3 more authors
    In 2023 11th International IEEE/EMBS Conference on Neural Engineering (NER) , Apr 2023
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2022

  1. Improved contact tracing using network analysis and spatial-temporal proximity
    A. Myall , R. Peach , Y. Wan , S. Mookerjee , E. Jauneikaite , and 6 more authors
    International Journal of Infectious Diseases, Mar 2022
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  2. Prediction of hospital-onset COVID-19 using networks of patient contact: an observational study
    A. Myall , J. Price , R. Peach , M. Abbas , S. Mookerjee , and 7 more authors
    International Journal of Infectious Diseases, Mar 2022
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2021

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    Characterising contact in disease outbreaks via a network model of spatial-temporal proximity
    Ashleigh Myall , Robert L. Peach , Yu Wan , Siddharth Mookerjee , Elita Jauneikaite , and 6 more authors
    Apr 2021
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    Informing antimicrobial management in the context of COVID-19: understanding the longitudinal dynamics of C-reactive protein and procalcitonin
    Damien K. Ming , Ashleigh C. Myall , Bernard Hernandez , Andrea Y. Weiße , Robert L. Peach , and 3 more authors
    BMC Infectious Diseases, Dec 2021
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    Integrated patient network and genomic plasmid analysis reveal a regional, multi-species outbreak of carbapenemase-producing Enterobacterales carrying both \textitbla _\textrmIMP and \textitmcr-9 genes
    Adhiratha Boonyasiri , Ashleigh C. Myall , Yu Wan , Frances Bolt , Alice Ledda , and 22 more authors
    Oct 2021
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    Network memory in the movement of hospital patients carrying antimicrobial-resistant bacteria
    Ashleigh C. Myall , Robert L. Peach , Andrea Y. Weiße , Siddharth Mookerjee , Frances Davies , and 2 more authors
    Applied Network Science, Dec 2021
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    Prediction of Cellular Burden with Host–Circuit Models
    Evangelos-Marios Nikolados , Andrea Y. Weiße , and Diego A. Oyarzún
    In Synthetic Gene Circuits , Dec 2021
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2020

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    Detecting carbapenemase-producing Enterobacterales (CPE): an evaluation of an enhanced CPE infection control and screening programme in acute care
    Jonathan A Otter , Siddharth Mookerjee , Frances Davies , Frances Bolt , Eleonora Dyakova , and 7 more authors
    Journal of Antimicrobial Chemotherapy, Sep 2020
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    Development and Delivery of a Real-time Hospital-onset COVID-19 Surveillance System Using Network Analysis
    James Richard Price , Siddharth Mookerjee , Eleonora Dyakova , Ashleigh Myall , Wendy Leung , and 11 more authors
    Clinical Infectious Diseases, Jul 2020
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2019

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    Growth Defects and Loss-of-Function in Synthetic Gene Circuits
    Evangelos-Marios Nikolados , Andrea Y. Weiße , Francesca Ceroni , and Diego A. Oyarzún
    ACS Synthetic Biology, Jun 2019
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2018

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    Sources, propagation and consequences of stochasticity in cellular growth
    Philipp Thomas , Guillaume Terradot , Vincent Danos , and Andrea Y. Weiße
    Nature Communications, Oct 2018
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    Survival of the Fattest: Evolutionary Trade-offs in Cellular Resource Storage
    Guillaume Terradot , Andreea Beica , Andrea Weiße , and Vincent Danos
    Electronic Notes in Theoretical Computer Science, Apr 2018
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2016

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    Signaling Tug-of-War Delivers the Whole Message
    Andrea Y. Weiße , Ahmad A. Mannan , and Diego A. Oyarzún
    Cell Systems, Nov 2016
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2015

  1. Quantifying host-circuit interactions with a mechanistic chassis model
    Andrea Weiße
    In Synthetic Biology: Engineering, Evolution, and Design Conference 2015, SEED 2015 , Nov 2015
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    Mechanistic links between cellular trade-offs, gene expression, and growth
    Andrea Y. Weiße , Diego A. Oyarzún , Vincent Danos , and Peter S. Swain
    Proceedings of the National Academy of Sciences, Mar 2015
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2013

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    Cumulative Signal Transmission in Nonlinear Reaction-Diffusion Networks
    Diego A. Oyarzún , Fernando López-Caamal , Míriam R. García , Richard H. Middleton , and Andrea Y. Weiße
    PLoS ONE, May 2013
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    Reduced Oct4 Expression Directs a Robust Pluripotent State with Distinct Signaling Activity and Increased Enhancer Occupancy by Oct4 and Nanog
    Violetta Karwacki-Neisius , Jonathan Göke , Rodrigo Osorno , Florian Halbritter , Jia Hui Ng , and 9 more authors
    Cell Stem Cell, May 2013
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2012

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    3. Chance and memory
    Theodore J Perkins , Andrea Y Weiße , and Peter S Swain
    In Quantitative Biology: From Molecular to Cellular Systems , May 2012

2011

  1. Error-controlled global sensitivity analysis of ordinary differential equations
    Andrea Y. Weiße , and Wilhelm Huisinga
    Journal of Computational Physics, Jul 2011
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2010

  1. Global sensitivity analysis of ODEs via the solution of the associated Fokker-Planck equation
    Andrea Y Weiße , and Wilhelm Huisinga
    In Proceedings of the 6th Workshop on Computation of Biochemical Pathways and Genetic Networks , Jul 2010
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    Quantifying uncertainty, variability and likelihood for ordinary differential equation models
    Andrea Y Weiße , Richard H Middleton , and Wilhelm Huisinga
    BMC Systems Biology, Dec 2010
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2009

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    Adaptive Dichtepropagation mit Approximate ApproximationsGlobal sensitivity analysis of ordinary differential equations: adaptive density propagation using approximate approximations
    Andrea Yeong Weiße
    Freie Universität Berlin , Dec 2009
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    Retention of gene products in syncytial spermatids promotes non-Mendelian inheritance as revealed by the \textitt complex responder
    Nathalie Véron , Hermann Bauer , Andrea Y. Weiße , Gerhild Lüder , Martin Werber , and 1 more author
    Genes \& Development, Dec 2009
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2006

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    Adaptive approach for modelling variability in pharmacokinetics
    Andrea Y Weiße , Illia Horenko , and Wilhelm Huisinga
    In CompLife , Dec 2006